Directly gated ion channels operate rapidly, and are used for physiological processes that need
speed. Fast processes include synaptic connections that includes much of the organism's
perceptual and motor behavior.
However neurons also have longer-lasting, regulatory effects in target cells. Regulation is
achieved by receptor mechanisms that are slower in onset and that persist for longer periods of
time.
In the brain, neurons make use of both transient and enduring forms of synaptic transmission,
using receptors that gate ion channels directly or second messengers. Synaptic actions by second
messengers can close ion channels that are open at the resting potential, thereby decreasing the
conductance of the membrane. In addition, second messengers can alter the biochemical state
of nerve cells. For example second messengers cant alter gene expression to initiate persistent
changes in function. Long lasting cellular modifications are extremely important in understanding
memory formation.
There are three ways by which cellular components move within the axon: Fast anterograde
(forward moving) axonal transport, slow axoplasmic flow and fast retrograde axonal transport. All
newly synthesized membranous organelles within axons and dendrites are exported to the axon
from the cell body by fast anterograde axonal transport. In warm blooded animals, organelles
move at a rate of 400mm/day. At the nerve terminals the vesicle membranes are recycled many
times, through exocytosis, for reuse in synaptic transmission. Membrane is constantly being
replaced by new components arriving from the cell body. At a compensating rate, existing
membrane components are returned form nerve terminals to the cell body, where they are either
degraded or reused.
Fast anterograde transport depends on one or more of the filaments that make up the neuron's
cytoskeleton. This axonal transport is based on microtubules that provide an essentially
stationary track on which specific organelles move in a saltatory fashion. Fast anterograde
transport is thought to depend on a microtubule- associated ATPase molecular complex known
as kinesin.
Slow axonal transport is based on the slow axoplasmic flow. This transport carries proteins used
to make up the fibrillar elements of cytoskeleton as well as the enzymes of intermediary
metabolism that are formed on free ribosomes.
Fast retrograde transport occurs in the retrograde direction from nerve endings toward the cell
body, returning materials from terminals to the cell soma either for degradation or for restoration
and reuse. These materials are packaged in large membrane-bound organelles that are part of
the lysosomal system. As in fast anterograde transport, particles move along microtubules. The
motor molecule for fast retrograde transport is a form of dynein, which is a microtubule
associated ATPase.

Induction of a cascade of second messengers involves the recognition of specific extracellular
signals (i.e., hormones, neurotransmitters, neuromodulators, growth factors, etc.) and activation of
effectors. Thus, for instance, in the family of metabotropic receptors, that gate channels
indirectly; recognition of the transmitter and activation of effectors are carried out by distinct
and separate molecules. This family includes the a- and B- adrenergic receptors, serotonin,
dopamine, and muscarinic acetyl choline receptors, receptors for neuropeptides and rhodopsin.
Each receptor is coupled to its effector molecule by a guanosine nucleotide-binding protein (a G
protein). Activation of the effector component requires the participation of several distinct
proteins. Typically the effector is an enzyme that produces a diffusible second messenger, for
example, cyclic adenosine monophosphate (cAMP), diacylglycerol, or an inositol polyphosphate.
These second messengers trigger biochemical cascade either activating specific protein kinases
(phosphate transferring proteins) that phosphorylate a variety of cellular proteins (thereby
altering their activities), or mobilizing Ca ions from intracellular stores, thus initiating the
reactions that changes the cells biochemical state. In some instances, the G protein of the
second messenger can act directly on an ion channel.

Second messenger systems also exert actions on many target proteins other than voltage
sensitive ion channels. A particularly interesting class of target proteins are the receptors for other
transmitters. Second messengers can affect both types of neurotransmitter receptors -
metabotropic and ionotropic. In this way, the action of one receptor can regulate its own
effectiveness or the effectiveness of a receptor for another transmitter. Thus, for example, after
prolonged exposure to its own chemical signal a receptor can become refractory to later
applications of the same compound, a process called desensitization. Although many
mechanisms produce diminished responsiveness, desensitization has been shown in several
instances to result from protein phosphorylation.

Second messengers can regulate gene expression and thereby endow intercellular signaling with
long lasting consequences. Recently, for example, a new kind of synaptic action has been
discovered by which transmitters, acting through second messengers, phosphorylate
transcriptional regulatory proteins thereby altering gene expression. Thus second-messenger kinases not only can produce previously existing proteins, but also can induce the synthesis of
new proteins by inducing gene expression. This kind of synaptic action can lead to other
changes, such as neuronal growth or synaptic remodeling, that can last days or even longer.
Long lasting changes like this one are very important during development and might be
instrumental in the formation of long term memory.
The same chemical transmitter can produce synaptic actions whit different time courses. A single
exposure to the transmitter can activate the c AMP second messenger system, which in turn
activates the cAMP dependent protein kinase that phosphorylates a K channel to produce a
synaptic potential that modifies neuronal excitability for a very short period of times; say,
minutes. However with repeated activation, the transmitter, acting through the cAMP dependent
protein kinase, also phosphorylates one or more transcriptional activator proteins that regulate
gene expression. This produces a protein that modifies the channel and results in a more
enduring alteration of the channel resulting in changes in neuronal excitability lasting days,
weeks or even more.Anterograde and retrograde transport
The secretory functions in neurons are essentially similar to that in other cell types. However,
given the extreme morphological polarity of nerve cells, there are important differences due to
the complexity of the mechanisms involved in the trafficking of neuronal proteins. It is to be
noted that cell bodies and nerve terminals are at considerable distance from each other. Consider
for example, a spinal motor neuron that innervate muscles around the knee joint. The
separation between cell body and nerve terminal imply the existence of a special transport
system to bring newly formed membrane and secretory products form the Golgi apparatus to the
terminal of the axon.